SCIEX QTRAP 5500 LC–MS/MS System with Agilent LC and CTC PAL Autosampler (200/240 V)
Overview
The SCIEX QTRAP 5500 is a hybrid triple quadrupole–linear ion trap mass spectrometer designed for sensitive and robust quantitative and qualitative LC–MS/MS analysis. This integrated system is supplied with an Agilent high-pressure liquid chromatography platform and a CTC PAL HTCx autosampler, providing a complete workflow for high-throughput analytical applications. The configuration supports fast polarity switching, advanced scan functions, and automated sample handling.
Highlights
- Hybrid triple quadrupole and linear ion trap (QTRAP) mass analyser
- Turbo V and nanoESI ion sources for flexible electrospray operation
- Integrated Agilent LC system rated to 600 bar with column oven and degasser
- CTC PAL HTCx autosampler with multi-injection capability and high-pressure valve
At-a-glance
- Condition
- Used — System is currently powered on and fully operational with calibration and cleaning certificates dated June 9, 2025
- Mass analyser type
- Hybrid triple quadrupole–linear ion trap (QTRAP 5500)
- Ionisation sources
- Turbo V electrospray and nanoESI ion sources
- Vacuum system
- One oil-free vacuum pump
- LC system
- Agilent HPLC (600 bar) including degasser, column oven, and solvent rack; operational qualification passed March 19, 2024
- Autosampler
- CTC PAL HTCx autosampler with multi-injection capability and 1300 bar Cheminert valve with rotor seal replaced in 2025
- Chiller configuration
- Dual chiller setup with quick-clean injector and dual wash pumps
- Software
- Analyst® 1.7 software with licence and SCIEX OS 1.7 software with licence
- Electrical requirement
- 200/240 V
- Included components
- QTRAP 5500 mass spectrometer, ion sources, vacuum pump, acquisition PC, display, keyboard, mouse, Agilent LC modules, CTC PAL autosampler, chillers, spray monitors, clamps, tubing, and accessories
Applications
This LC–MS/MS system is widely used for quantitative bioanalysis, including small-molecule, metabolite, and pharmaceutical research. The QTRAP functionality supports both targeted quantification and enhanced qualitative workflows such as product ion and MS3 scans. Integration with automated liquid handling enables high-throughput analytical studies in research laboratories.
Sustainability
By rehoming surplus lab products, this listing supports waste reduction and resource efficiency.

